Charcoal Rot Is A Hidden Threat to Soybean Yield

July 17, 2017, 9:36 am | Daren Mueller, Jody Korthaus

Charcoal Rot StemAMES, Iowa –The persistent hot weather in many areas of the country this growing season may be conducive to the development of charcoal rot disease in soybean. Farmers, agronomists, crop consultants and specialists are encouraged to scout for this particular disease now. Although charcoal rot is most severe in years and areas experiencing hot, dry weather, this disease can also cause losses when ample moisture is present, making it a hidden threat to yield.   

“The fungus generally infects soybean seedlings early in the growing season, yet foliar symptoms may not appear until mid-season or later during reproductive growth stages,” said Kiersten Wise, associate professor and extension grain crops specialist at University of Kentucky. “Symptoms generally develop as a result of an external stress, such as drought or high temperatures and are easy to confuse with several other diseases and disorders, including soybean cyst nematode injury, early senescence and drought stress.”

The causal fungus spreads from the roots to the stem, filling tissues with small, dark, round fungal structures called microsclerotia. These structures clog vascular tissue, causing wilting, yellowing, and stunting of the plant, which is more apparent in drought-stressed areas.

“It is important to determine if charcoal rot is present because microsclerotia can survive in soil for several years and the fungus can infect a number of rotation crops, including corn, cotton and grain sorghum, which limits the effectiveness of tillage and rotation for managing the disease,” said Daren Mueller, associate professor and extension plant pathology specialist at Iowa State University.Charcoal Rot Field View

To determine if charcoal rot is present, remove symptomatic plants from the soil profile and either split the lower stems or gently remove the outer bark of the plant to look for microsclerotia.

“Producers with confirmed fields containing charcoal rot-affected plants should work with seed dealers to select less susceptible varieties and avoid planting at high populations to reduce competition for water among plants,” said Tom Allen, extension plant pathology specialist at Mississippi State University. “Genetic resistance is limited, but may be available.”

Foliar fungicides are ineffective at preventing or reducing disease development. Irrigating soybeans can help reduce water stress, but may not prevent charcoal rot development in fields with a history of the disease or in situations where irrigation is poorly managed.

Research Efforts
The United Soybean Board and North Central Soybean Research Program have funded research to help understand charcoal rot. Through these projects, resources have been developed that can be used by soybean farmers and other agriculture allied personnel to help diagnose and manage charcoal rot. In general, effective management begins by properly diagnosing the disease. However, when observed in field situations, in-season management practices are not available and an integrated management approach should be used for subsequent seasons. As a result of the funded research projects, several publications have been developed to provide information on properly diagnosing charcoal rot as well as best management practices to reduce yield losses.

Top photo: Black fungal structures called microsclerotia can be observed in stem tissue infected by the fungus that causes charcoal rot. (Image courtesy Tristan Mueller)

Bottom photo: Foliar symptoms of charcoal rot can be confused with other diseases and disorders. (Image courtesy Daren Mueller)

Additional Contacts:

  • Kiersten Wise, Associate Professor and Extension Grain Crops Specialist, University of Kentucky; 270-365-7541,
  • Tom Allen, Extension Plant Pathology Specialist, Mississippi State University;
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