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Extension 4-H Youth Building
Ames, Iowa 50011-3630
(515) 294-9915

5/26/04

Contacts:
Alison Robertson, Plant Pathology, (515) 294-6708, alisonr@iastate.edu
Jean McGuire, Continuing Education and Communication Services, (515) 294-7033, jmcguire@iastate.edu

Diseases That May Affect Flooded Corn and Soybean Seedlings

By Alison Robertson,
Plant Pathologist
Iowa State University Extension

The heavy rain, flooding and hail that has hit Iowa over the past few days has made some corn and soybean plants susceptible to seedling diseases.

First, it is important to determine if seedling problems are related to a disease or some other cause. Above ground symptoms of seedling diseases include failure to emerge, or emergence of plants with poor color, slow growth, and wilting and withering of the leaves, followed by the collapse of the plant. Symptoms are worse in areas that are wet, compacted or have heavier soil. Symptoms may occur on scattered plants or in small-to-large patches. Since other pests and problems mimic these symptoms, it is important to dig up seedlings and examine them for the symptoms described below, or for symptoms of herbicide injury or insect feeding.

Corn seedling diseases
Pythium and Fusarium are the most common fungi associated with seed rot and seedling blight of corn. Other fungi that can cause seedling problems include Rhizoctonia, Penicillium, Colletotrichum and Diplodia.

Pythium
Pythium infection is favored by wet, cool soils. Several species of Pythium are able to attack young seedlings after emergence. Seedlings tend to yellow, wilt and die. Examination of the seedlings reveals dark, slimy lesions on the roots or mesocotyl. Often the outer tissue of the root is infected and may peel off, revealing a white stele.

Fusarium
Fusarium symptoms tend to be tan-to-reddish brown leathery lesions that cause the root or mesocotyl to shrivel. If the seedlings continue to contend with wet conditions, Fusarium infections can persist and move into the crown and stalk tissues. Normally, the crown tissue of healthy corn plants is slightly darker than the surrounding tissue, but Fusarium infection usually results in an even darker color. The fungus can cause substantial rotting of the crown tissue which results in stunting, leaf discoloration, wilting, and even death of infected plants. Stressful growing conditions cause the plants to become more susceptible to this type of infection.

If the weather improves, you can expect some of the infected plants will recover. However if the decay is severe, the plants may die later, since the decayed crown cannot support the moisture needs of the plant after the weather becomes warm and sunny. In this case, watch for plants that wilt and die suddenly. Crown infections can persist well into the season, and eventually result in stalk rot. Therefore, if you observe crown rot problems in a field, watch for stalk rot later.

Since Fusarium species are common in crop residue and soil, resistance to this type of infection is not available. However, there are a few practical control measures growers can follow. Fungicidal seed treatment will not persist long enough to help in this situation. If predisposing stresses can be identified, alleviating them will reduce losses to Fusarium. If plants are stunted but the crowns are not totally destroyed, cultivation may promote development of the nodal root system and help the plants recover.

Others
Rhizoctonia, Penicillium, Colletotrichum, and Diplodia all cause a general darkening and reduction in size of the young root system and it is very difficult or impossible to tell them apart in the field.

Anthracnose leaf blight
Anthracnose leaf blight (Colletotrichum graminicola) frequently accompanies other seedling diseases and contributes to the death of a plant by killing off what little leaf tissue it has left. This fungus causes brown or tan oval leaf lesions with a dark brown border.

Soybean seed decay, pre- and post-emergence diseases
Wet soils are ideal for fungal root rot diseases in soybean fields and it is not uncommon to see “damping-off” in areas larger than 50 acres. In Iowa, seedling blight is most commonly caused by Pythium, Phytophthora, Rhizoctonia and Fusarium. Disease problems associated with these pathogens include seed decay and pre- and post-emergence.

Pythium and Phytophthora
Seedling blight symptoms caused by Pythium are very similar to those caused by Phytophthora and laboratory tests are often required to separate the two. Dead seedlings are visible on the ground when seedling blight occurs. Infected plants that die before the true leaf stage will have a rotted appearance. If leaves are present, they are a gray-green color and then they turn brown and die a few days later. Diseased plants are pulled easily from the soil because roots are rotted. Pythium infections are associated with soybeans planted in cold, wet soil. If seedling blight occurs in warm conditions, it is more likely to be caused by Phytophthora. In addition, the stems of young Phytophthora-infected seedlings may show a brown discoloration that begins at the soil line and extends up the stem.

Rhizoctonia
Rhizoctonia and Fusarium seedling disease fungi show slightly different symptoms from those caused by Pythium and Phytophthora. Seedling blight by Rhizoctonia normally appears when warm weather begins to arrive. Unlike Pythium or Phytophthora damping-off, stem discoloration by Rhizoctonia usually is limited to the cortical layer of the main root and the hypocotyl. Infected stems remain firm. Typical symptoms are localized brown to reddish-brown lesions that girdles the hypocotyl and lower stem. The reddish-brown color is a good symptom to aid in diagnosing the disease.

Fusarium
Compared with the other fungi, Fusarium is a minor problem in Iowa, causing about 10 percent of seedling blight problems each year. Any factor that delays germination and emergence favors the development of Fusarium seedling blight and root rot. Brown to a dark purple brown or black lesions develop on the taproot and may increase in size and girdle the taproot. The lower part of the taproot and the lateral root system can be completely rotted.

Brown spot
Soybean plants with root rot are more susceptible to brown spot caused by Septoria glycines. Practices that reduce plant stress and increase vigor will help reduce the chances of infection by brown spot. Plants, as young as the V2 growth stage, can show brown spot symptoms. The fungus spreads in splashing rain from the soil to soybean plants. Symptoms of the disease are many irregular, chocolate to blackish-brown spots on both upper and lower leaf surfaces. Adjacent lesions frequently merge to form irregularly shaped blotches. Sometimes, brown spot is mistaken as bacterial blight, however in early disease stages, lesions of bacterial blight have a yellow halo, brown spot lesions do not.

We cannot predict the development of this disease so there are no remedial measures that can be taken. Plant growth is normally unaffected and soybean can outgrow the disease if the weather in midsummer is less wet. However, if the rain continues, the disease will progress rapidly from the lower leaves to the upper leaves.

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